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PhotoStuff (formerly LOD2) is a software tool for linking and annotating digital images. This web service is built upon the very fast, low-latency, high-speed image analysis and annotation technology developed by the laboratory of vision and imaging (LVI). PhotoStuff can efficiently link and annotate images to resources stored in a standard online database such as the Digital Image Library (DIL). PhotoStuff can annotate one or more images in batch, or it can process an entire directory of images. Annotations for an image are given as a network of objects, which are constrained to certain spatial relations and concepts (attributes). These object-attribute relations can be useful to mark up a large number of images to discover commonalities and differences. For example, a photographer can document her travel vacation with a relation of a tourist attraction (attributes) to each of the pictures of her trip. PhotoStuff supports many different types of relations and attributes. For example, one image can be annotated as having been taken in India (attributes) with a relation of a landmark (attributes), and another image taken in Germany (attributes) with a relation of a view (attributes).

This is a listing of packages, classes, functions, and variables.
All objects are listed alphabetically by class and then by module. If the class is in multiple modules, they are listed in alphabetical order within the module. The following kind of code would be considered bad style because the order of operations would not be apparent:

The reason we have the index here and not in the package object itself is that the index is written once in a setup script and is shared between all indexes, whereas the package object is created when the package is loaded. The index is the critical component of the package because the search for classes, functions, and variables is restricted to the classes listed in the index. For example, the only function we are allowed to call is func_index.

Contributed to a Perl 5 distribution by Jeffrey D. O’Hara.




HTML object that renders the index page.


HTML object that renders the index page.


Main function.


Pod::Index object for the POD index.


Pod::Index object for the POD index.


Package::Index object

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The KEYMACRO ontology uses JSON-LD to describe a set of keystrokes to perform a particular action. Users can define a keystroke to annotate images. The ontology is used by PhotoStuff to markup an image with the keystrokes that were pressed when the image was taken.
KEYMACRO is based on information from a research paper about keyboard macro-execution. We have made a small number of updates to this ontology, and we are open to additional updates as research into other macro systems evolves.
The ontology itself is based on the Open Communications Framework (OCF), which is an emerging standard for application level communication between machines.

The ontology for Data and Evaluation for Life Science (OLEMLS) is an open-source, file-based, unified semantic knowledge representation for the life sciences. OLEMLS is built upon RDF, OWL, XML, and simple Java code. The primary goal of OLEMLS is to serve as a model and a repository of knowledge to facilitate exchange of data and evaluation results between disparate sources. As a life science ontology, OLEMLS is primarily concerned with the evaluation and management of animal and plant phenotypic and genotypic data and associated metadata. It is designed to meet the requirements of both model-based data annotation (e.g., models for phenotypes and organisms in BioModels database) and ontology-based data curation (e.g., annotations of genotypes and phenotypes in Gene Ontology database).

For data annotation purposes, the BioCyc database consists of over 400 pathways and 20,000 subsystems in the KEGG pathway database. This ontology allows visualization of genes and reactions in the context of a genomic pathway and metabolic subsystem. The BioCyc curation ontology provides a high level of granularity of data for the BioCyc database. Subsystems are atomic units and are defined as potential pathways of reactions. Any particular pathway is an assembly of subsystems. The ontology is designed to be useful to curators of metabolic pathways in the KEGG database, as well as researchers trying to annotate genes and reactions in their own work. The BioCyc curation ontology is designed to facilitate annotation and access to data.

One of the primary goals of the OBO Foundry is to foster interoperability of data and tools. The use of a common data model for biomedical ontologies and controlled vocabularies

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*PhotoStuff* is a small command line tool, written in Perl, that allows annotating images with different concepts or objects from an ontology.
Key features:
* Import images into the tool from disk or from the web
* Upload image files to any image hosting site such as Flickr, Google Images, or Imageshack
* Upload ontologies to be annotated
* Perform keyword annotation or ontology based markup
* Perform a basic statistical analysis on an image
* Export results in CSV, binary, and XML formats
* Export annotations to the image for comparison
* Export annotated images to the web
* Export annotations as PDFs
* May include source files (Perl, ImageMagick, BioPerl, GD)
* May include Debian packages
* May include Git repository (if you run it from source)
* May include CDE packages
* The author is an undergraduate student at the University of British Columbia. The software is under active development.
* Comments and suggestions for improvement are appreciated.
Perl License v1.0
* User-installable packages: Perl, ImageMagick, BioPerl, GD
* Upstream-installable packages: Image::Magick, GD, Image::JPEG
* Upstream-uninstallable packages: Image::Magick, GD, Image::JPEG
* Upstream-installable and upstream-uninstallable packages: none
* Upstream-uninstallable packages (dependencies: Perl, GD): BioPerl
* Upstream-uninstallable packages (dependencies: Perl): GD
* Upstream-installable packages: ImageMagick
* Upstream-uninstallable packages: GD
* Upstream-installable packages (dependencies: Perl): BioPerl
* Upstream-uninstallable packages (dependencies: BioPerl): ImageMagick
* Upstream-uninstallable packages (dependencies: BioPerl): GD
* Upstream-uninstallable packages (dependencies: GD): ImageMagick
* Upstream-uninstallable packages (dependencies: GD, ImageMagick): Perl
* Upstream-uninstallable packages (dependencies: none): none
* Upstream-installable and upstream-uninstallable packages (dependencies: none): none
Additional modules and functionality:
* PCloze

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PhotoStuff is a tool for annotating regions of interest in an image based on a set of predefined ontologies.
PhotoStuff works by creating a GVOC instance base, using the desired ontology to describe a region of interest in an image, then uses this instance base to annotate the image with the ontology’s concepts.

The ontology is stored in a data base and the instance base is created by matching the stored ontology to the region of interest in the image, using an OCR library to produce text from the image. The graph of the instance base is stored in the database for fast lookup.

PhotoStuff is highly configurable. The ontology in the database can be configured to take account of:
– annotation placement
– annotation size
– annotation colour
– annotation position
– annotation style
– annotation text
– annotation rotation
– annotation orientation
– width and height of background image (any ontology type)
– width and height of annotations
– angle of data annotation
– ratio of data annotation to background
– font type, font colour and font size
– font rotation
– text wrapping (number of lines)
– text rotation
– border colour
– border width
– background colour
– background image (any ontology type)
– background image scale
– zooming of image
– zooming of annotations
– image normalization
– image brightness and contrast
– change of the font’s colour, size, etc.
– automatic linking of annotations (all ontology types)
– automatic alignment of annotations (all ontology types)

PhotoStuff can be installed directly from this site. If the source tar.gz is not the appropriate one, just download the tar.gz from this site. Unpack it and run:
# make
# make install
# installphotostuff
# make uninstall
# make uninstall
# cd /usr/local/bin/
# ln -s photostuff
# cd /usr/local/share/photostuff/Annotations
# ln -s./icons/photostuff
# cd /usr/local/share/icons/Hicolor/48×48/apps/
# ln -s./icons/photostuff
# chown www-data /usr/local/share/icons/Hicolor/48×48/apps/icons/photostuff

About photostuff:
PhotoStuff works with any ontology, the ones used in this document are:

– European SysML Part 1
– OSGEO: OpenStreetMap Tagged Key

System Requirements:

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Resolution: 800 x 600
DirectX: 9.0c
CPU: Intel P4 2.5Ghz or AMD Phenom
Memory: 2GB RAM
Hard drive: 15GB Free
Graphics: 32MB Nvidia 9400
Networking: Broadband Internet connection
CD-ROM drive: CD-RW Drive or Steam installed or Steam In-home Streaming with Internet Browser
Changes from the original Redux “Nightfall”Expression of immunoreactive

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